Genomic analysis of three African strains of Bacillus anthracisdemonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium
Identifieur interne : 000209 ( Main/Exploration ); précédent : 000208; suivant : 000210Genomic analysis of three African strains of Bacillus anthracisdemonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium
Auteurs : L. Rouli [France] ; M. Mbengue [Sénégal] ; C. Robert [France] ; M. Ndiaye [Sénégal] ; B. La Scola [France] ; D. Raoult [France]Source :
- New Microbes and New Infections [ 2052-2975 ] ; 2014.
Abstract
Url:
DOI: 10.1002/nmi2.62
PubMed: 25566394
PubMed Central: 4265047
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genomic analysis of three African strains of <italic>Bacillus anthracis</italic>demonstrates that they are part of the clonal expansion of an exclusively pathogenic
bacterium</title><author><name sortKey="Rouli, L" sort="Rouli, L" uniqKey="Rouli L" first="L" last="Rouli">L. Rouli</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095</institution><addr-line>Marseille, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Marseille</wicri:regionArea></affiliation></author><author><name sortKey="Mbengue, M" sort="Mbengue, M" uniqKey="Mbengue M" first="M" last="Mbengue">M. Mbengue</name><affiliation wicri:level="1"><nlm:aff id="au2"><institution>Laboratoire National d'Elevage et des Recherches Vétérinaires (LNERV), Institut Sénégalais de Recherches Agricoles (ISRA)</institution><addr-line>Hann, Dakar, Senegal</addr-line></nlm:aff><country xml:lang="fr">Sénégal</country><wicri:regionArea>Hann, Dakar</wicri:regionArea><wicri:noRegion>Dakar</wicri:noRegion></affiliation></author><author><name sortKey="Robert, C" sort="Robert, C" uniqKey="Robert C" first="C" last="Robert">C. Robert</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095</institution><addr-line>Marseille, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Marseille</wicri:regionArea></affiliation></author><author><name sortKey="Ndiaye, M" sort="Ndiaye, M" uniqKey="Ndiaye M" first="M" last="Ndiaye">M. Ndiaye</name><affiliation wicri:level="1"><nlm:aff id="au3"><institution>Laboratoire de Biologie Cellulaire, Faculté des Sciences et Techniques de l'Université Cheikh Anta DIOP de Dakar (UCAD)</institution><addr-line>Dakar, Senegal</addr-line></nlm:aff><country xml:lang="fr">Sénégal</country><wicri:regionArea>Dakar</wicri:regionArea></affiliation></author><author><name sortKey="La Scola, B" sort="La Scola, B" uniqKey="La Scola B" first="B" last="La Scola">B. La Scola</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095</institution><addr-line>Marseille, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Marseille</wicri:regionArea></affiliation></author><author><name sortKey="Raoult, D" sort="Raoult, D" uniqKey="Raoult D" first="D" last="Raoult">D. Raoult</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095</institution><addr-line>Marseille, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Marseille</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25566394</idno><idno type="pmc">4265047</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4265047</idno><idno type="RBID">PMC:4265047</idno><idno type="doi">10.1002/nmi2.62</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000568</idno><idno type="wicri:Area/Pmc/Curation">000568</idno><idno type="wicri:Area/Pmc/Checkpoint">000197</idno><idno type="wicri:Area/Ncbi/Merge">000591</idno><idno type="wicri:Area/Ncbi/Curation">000591</idno><idno type="wicri:Area/Ncbi/Checkpoint">000591</idno><idno type="wicri:doubleKey">2052-2975:2014:Rouli L:genomic:analysis:of</idno><idno type="wicri:Area/Main/Merge">000209</idno><idno type="wicri:Area/Main/Curation">000209</idno><idno type="wicri:Area/Main/Exploration">000209</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genomic analysis of three African strains of <italic>Bacillus anthracis</italic>demonstrates that they are part of the clonal expansion of an exclusively pathogenic
bacterium</title><author><name sortKey="Rouli, L" sort="Rouli, L" uniqKey="Rouli L" first="L" last="Rouli">L. Rouli</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095</institution><addr-line>Marseille, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Marseille</wicri:regionArea></affiliation></author><author><name sortKey="Mbengue, M" sort="Mbengue, M" uniqKey="Mbengue M" first="M" last="Mbengue">M. Mbengue</name><affiliation wicri:level="1"><nlm:aff id="au2"><institution>Laboratoire National d'Elevage et des Recherches Vétérinaires (LNERV), Institut Sénégalais de Recherches Agricoles (ISRA)</institution><addr-line>Hann, Dakar, Senegal</addr-line></nlm:aff><country xml:lang="fr">Sénégal</country><wicri:regionArea>Hann, Dakar</wicri:regionArea><wicri:noRegion>Dakar</wicri:noRegion></affiliation></author><author><name sortKey="Robert, C" sort="Robert, C" uniqKey="Robert C" first="C" last="Robert">C. Robert</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095</institution><addr-line>Marseille, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Marseille</wicri:regionArea></affiliation></author><author><name sortKey="Ndiaye, M" sort="Ndiaye, M" uniqKey="Ndiaye M" first="M" last="Ndiaye">M. Ndiaye</name><affiliation wicri:level="1"><nlm:aff id="au3"><institution>Laboratoire de Biologie Cellulaire, Faculté des Sciences et Techniques de l'Université Cheikh Anta DIOP de Dakar (UCAD)</institution><addr-line>Dakar, Senegal</addr-line></nlm:aff><country xml:lang="fr">Sénégal</country><wicri:regionArea>Dakar</wicri:regionArea></affiliation></author><author><name sortKey="La Scola, B" sort="La Scola, B" uniqKey="La Scola B" first="B" last="La Scola">B. La Scola</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095</institution><addr-line>Marseille, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Marseille</wicri:regionArea></affiliation></author><author><name sortKey="Raoult, D" sort="Raoult, D" uniqKey="Raoult D" first="D" last="Raoult">D. Raoult</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Aix Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095</institution><addr-line>Marseille, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Marseille</wicri:regionArea></affiliation></author></analytic><series><title level="j">New Microbes and New Infections</title><idno type="ISSN">2052-2975</idno><idno type="eISSN">2052-2975</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Bacillus anthracis</italic> is the causative agent of anthrax and is classified as a
‘Category A’ biological weapon. Six complete genomes of
<italic>B. anthracis</italic> (A0248, Ames, Ames Ancestor, CDC684, H0491, and Sterne) are
currently available. In this report, we add three African strain genomes: Sen2Col2, Sen3 and Gmb1.
To study the pan-genome of <italic>B. anthracis</italic>, we used bioinformatics tools, such
as Cluster of Orthologous Groups, and performed phylogenetic analysis. We found that the three
African strains contained the pX01 and pX02 plasmids, the nonsense mutation in the
<italic>plcR</italic> gene and the four known prophages. These strains are most similar to the
CDC684 strain and belong to the A cluster. We estimated that the
<italic>B. anthracis</italic> pan-genome has 2893 core genes (99% of the genome size)
and 85 accessory genes. We validated the hypothesis that <italic>B. anthracis</italic> has a
closed pan-genome and found that the three African strains carry the two plasmids associated with
bacterial virulence. The pan-genome nature of <italic>B. anthracis</italic> confirms its lack
of exchange (similar to <italic>Clostridium tetani</italic>) and supports its exclusively pathogenic
role, despite its survival in the environment. Moreover, thanks to the study of the core content
single nucleotide polymorphisms, we can see that our three African strains diverged very recently
from the other <italic>B. anthracis</italic> strains.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Scarlata, F" uniqKey="Scarlata F">F Scarlata</name></author><author><name sortKey="Colletti, P" uniqKey="Colletti P">P Colletti</name></author><author><name sortKey="Bonura, S" uniqKey="Bonura S">S Bonura</name></author><author><name sortKey="Trizzino, M" uniqKey="Trizzino M">M Trizzino</name></author><author><name sortKey="Giordano, S" uniqKey="Giordano S">S Giordano</name></author><author><name sortKey="Titone, L" uniqKey="Titone L">L Titone</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, Db" uniqKey="Wang D">DB Wang</name></author><author><name sortKey="Tian, B" uniqKey="Tian B">B Tian</name></author><author><name sortKey="Zhang, Zp" uniqKey="Zhang Z">ZP Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Koehler, Tm" uniqKey="Koehler T">TM 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Nikolich</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>France</li><li>Sénégal</li></country></list><tree><country name="France"><noRegion><name sortKey="Rouli, L" sort="Rouli, L" uniqKey="Rouli L" first="L" last="Rouli">L. Rouli</name></noRegion><name sortKey="La Scola, B" sort="La Scola, B" uniqKey="La Scola B" first="B" last="La Scola">B. La Scola</name><name sortKey="Raoult, D" sort="Raoult, D" uniqKey="Raoult D" first="D" last="Raoult">D. Raoult</name><name sortKey="Robert, C" sort="Robert, C" uniqKey="Robert C" first="C" last="Robert">C. Robert</name></country><country name="Sénégal"><noRegion><name sortKey="Mbengue, M" sort="Mbengue, M" uniqKey="Mbengue M" first="M" last="Mbengue">M. Mbengue</name></noRegion><name sortKey="Ndiaye, M" sort="Ndiaye, M" uniqKey="Ndiaye M" first="M" last="Ndiaye">M. Ndiaye</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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